Egan, Ashley N., (2020) "On the accepted name of the Paria River breadroot, Pediomelum pariense (S.L. Welsh & N.D. Atwood) J.W. Grimes" (Issue: 4, vol. 80). United States: Western North American Naturalist.

Egan, Ashley N., Meyers, Stephen C., Jaster, Thea , Mitchell, Katie E., Harvey, Tanya , Hardison, Linda K., (2020) "Ladeania" (vol. 2). Fort Worth, Texas: Flora of Oregon, Botanical Research Institute of Texas Press.

Egan, Ashley N., Meyers, Stephen C., Jaster, Thea , Mitchell, Katie E., Harvey, Tanya , Hardison, Linda K., (2020) "Rupertia" (vol. 2). Fort Worth, Texas: Flora of Oregon, Botanical Research Institute of Texas.

Egan, Ashley N., (2020) "Economic and ethnobotanical uses of tubers in the genus Pueraria DC." (Issue: 2020-11, vol. 19). Legume Perspectives. https://www.legumesociety.org/wp-content/uploads/2020/11/legum_perspect_19.pdf

Hughes, Colin , Egan, Ashley N., Murphy, Daniel J., Kajita, Tadashi , (2019) "Advances in Legume Systematics 13" (vol. 32). Australia: Australian Systematic Botany. https://doi.org/10.1071/SBv32n6_ED

Legume Phylogeny Working Group, Array , Egan, Ashley N., (2019) "Towards a new online species-information system for legumes" (vol. 32). Australian Systematic Botany. https://doi.org/10.1071/SB19025

Egan, Ashley N., Vatanparast, Mohammad , (2019) "Advances in legume research in the genomics era" (vol. 32). Australia: Australian Systematic Botany. https://doi.org/10.1071/SB19019

Dohle, Sarah , Berny Mier y Teran, Jorge Carlos, Egan, Ashley N., Kisha, Theodore , Khoury, Colin K., Greene, S L, Williams, K A, Khoury, C K, Kantar, M B, Marek, L F, (2019) "Wild beans (Phaseolus L.) of North America" (vol. 2). Switzerland: North American Crop Wild Relatives, Volume 2_ Important Species. Springer Nature. https://link.springer.com/chapter/10.1007/978-3-319-97121-6_4

Egan, Ashley N., Moore, Shanna , Stellari, Giulia Marina, Kang, Byoung-Cheorl , Jahn, Molly M., (2019) "Tandem gene duplication and recombination at the AT3 locus in the Solanaceae, a gene essential for capsaicinoid biosynthesis in Capsicum" (Issue: 1, vol. 14). PLOS ONE. https://doi. org/10.1371/journal.pone.0210510

Haynsen, Matthew S., Vatanparast, Mohammad , Mahadwar, Gouri , Zhu, Dennis , Moger-Reischer, Roy Z., Doyle, Jeff J., Crandall, Keith A., Egan, Ashley N., (2018) "De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides kudzu transcriptomes for the development of eSSR and SNP markers_ narrowing the U.S. origin(s) of the invasive kudzu" (vol. 19). BMC Genomics. https://doi.org/10.1186/s12864-018-4798-3

Vatanparast, Mohammad , Powell, Adrian , Doyle, Jeff J., Egan, Ashley N., (2018) "Targeting legume loci_ a comparison of three methods for targeted enrichment baits design in Leguminosae phylogenomics" (Issue: 3, vol. 6). Applications in Plant Science. doi:10.1002/aps3.1036

Lepcha, Patrush , Egan, Ashley N., Doyle, Jeff J., Sathyanarayana, N. , (2017) "A review on current status and future prospects of winged bean (Psophocarpus tetragonolobus) in tropical agriculture" (Issue: 3, vol. 72). Plant Foods For Human Nutrition. DOI 10.1007/s11130-017-0627-0

Sathyanarayana, N. , Pittala, Ranjith Kumar, Tripathi, Pankaj Kumar, Chopra, Ratan , Singh, Heikham Russiachand, Belamkar, Vikas , Bhardwaj, Pardeep Kumar, Doyle, Jeff J., Egan, Ashley N., (2017) "Transcriptomic resources for the medicinal legume Mucuna pruriens_ de novo transcriptome assembly, annotation, identification and validation of EST-SSR markers" (vol. 18). BMC Genomics. DOI 10.1186/s12864-017-3780-9

Legume Phylogeny Working Group, Array , Egan, Ashley N., (2017) "A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny" (Issue: 1, vol. 66). Taxon. DOI: https_//doi.org/10.5061/dryad.61pd6

Egan, Ashley N., Vatanparast, Mohammad , Cagle, William , (2016) "Parsing polyphyletic Pueraria_ delimiting distinct evolutionary lineages through phylogeny" (Issue: 2016, vol. 104). Molecular Phylogenetics and Evolution. http://dx.doi.org/10.1016/j.ympev.2016.08.001

Egan, Ashley N., Puttock, Christopher F., (2016) "The genus Haymondia A.N. Egan & B.Pan bis (Fabaceae) in Thailand" (Issue: 1, vol. 44). Thai Forest Bulletin. doi: 10.20531/tfb .2016.44.1.06

Egan, Ashley N., Puttock, Christopher F., (2016) "Toxicopueraria peduncularis, a new genus and species record to Thailand" (Issue: 1, vol. 44). Thailand: Thai Forest Bulletin. https://doi.org/10.20531/tfb.2016.44.1.04

Vatanparast, Mohammad , Shetty, Prateek , Chopra, Ratan , Doyle, Jeff J., Sathyanarayana, N. , Egan, Ashley N., (2016) "Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae)" (vol. 6). Scientific Reports. DOI: 10.1038/srep29070

Wen, Jun , Egan, Ashley N., Dikow, Rebecca B., Zimmer, Elizabeth A., Hörandl, E. , Appelhans, M. S., (2015) "Utility of transcriptome sequencing for phylogenetic inference and character evolution" (Issue: 2, vol. 158). Konigstein: Next Generation Sequencing in Plant Systematics, Regnum Vegetabile, Koeltz Scientific Books. http://dx.doi.org/10.14630/000003

Egan, Ashley N., Pan, Bo , (2015) "Resolution of polyphyly in Pueraria (Leguminosae, Papilionoideae): The creation of two new genera, Haymondia and Toxicopueraria, the resurrection of Neustanthus, and a new combination in Teyleria" (Issue: 2, vol. 218). Phytotaxa. http://dx.doi.org/10.11646/phytotaxa.218.3.1

Egan, Ashley N., Pan, Bo , (2015) "Pueraria stracheyi, a new synonym to Apios carnea (Fabaceae)" (Issue: 2, vol. 218). Phytotaxa. http://dx.doi.org/10.11646/phytotaxa.218.2.4

de Queiroz, Luciano Paganucci, Pastore, José Floriano B., Cardoso, Domingos , Snak, Cristiane , de C. Lima, Ana Lúisa , Gagnon, Edeline , Vatanparast, Mohammad , Holland, Ailsa E., Egan, Ashley N., (2015) "A multilocus phylogenetic analysis reveals the monophyly of a recircumscribed papilionoid legume tribe Diocleae with well-supported generic relationships" (vol. 90). Molecular Phylogenetics and Evolution. http://dx.doi.org/10.1016/j.ympev.2015.04.016

Lu, Yi-Jun , Chen, Chuan , Wang, Rui-Hong , Egan, Ashley N., Fu, Cheng-Xin , (2015) "The effects of domestication on genetic diversity in Chimonanthus praecox_ evidence from cpDNA and AFLP data" (Issue: 3, vol. 53). China: Journal of Systematics and Evolution. doi: 10.1111/jse.12134

Egan, Ashley N., (2015) "Species delimitation and recognition in the Pediomelum megalanthum complex (Fabaceae) via multivariate morphometrics" (vol. 44). Phytokeys. https://doi.org/10.3897/phytokeys.44.8750

Sherman-Broyles, Sue , Bombarely, Aureliano , Powell, Adrian F., Doyle, Jane L., Egan, Ashley N., Coate, Jeremy E., Doyle, Jeff J., (2014) "The wild side of a major crop_ Soybean's perennial cousins from Down Under" (Issue: 10, vol. 101). American Journal of Botany. https://doi.org/10.3732/ajb.1400121

Legume Phylogeny Working Group, Array , Egan, Ashley N., (2013) "Towards a new classification system for legumes_ Progress report from the 6th International Legume Conference" (vol. 89). South Africa: South African Journal of Botany. http://dx.doi.org/10.1016/j.sajb.2013.07.022

Legume Phylogeny Working Group, Array , Egan, Ashley N., (2013) "Legume phylogeny and classification in the 21st century_ progress, prospects and lessons for other species-rich clades" (Issue: 2, vol. 62). Taxon.

Yahara, Tetsukazu , Javadi, Firouzeh , Onoda, yusuke , de Queiroz, Luciano Paganucci, Faith, Daniel P., Prado, Darién E., Akasaka, Munemitsu , Kadoya, Taku , Ishihama, Fumiko , Array, Stuart , Slik, J.W. Ferry , Yi, Tingshuang , Ma, Keping , Bin, Chen , Darnaedi, Dedy , Pennington, R. Toby , Tuda, Midori , Shimada, Masakazu , Ito, Motomi , Egan, Ashley N., Buerki, Sven , Raes, Niels , Kajita, Tadashi , Vatanparast, Mohammad , Mimura, Makiko , Tachida, Hidenori , Iwasa, Yoh , Smith, Gideon F., Victor, Janine E., Nkonki, Tandiwe , (2013) "Global legume diversity assessments_ Concepts, key indicators, and strategies" (Issue: 2, vol. 62). Taxon.

Ashfield, Tom , Egan, Ashley N., Pfeil, Bernard E., Chen, Nicolas W.G., Podicheti, Ram , Ratnaparkhe, Milind B., Ameline-Torregrosa, Carine , Denny, Roxanne , Cannon, Steven , Doyle, Jeff J., Geffroy, Valérie , Roe, Bruce A., Maroof, Saghai , Young, Nevin D., Innes, Roger W., (2012) "Evolution of a complex disease resistance gene cluster in diploid Phaseolus and tetraploid Glycine" (Issue: 1, vol. 159). Plant Physiology. https://doi.org/10.1104/pp.112.195040

Acuńa, Ricardo , Padilla, Beatriz E., Flórez-Ramos, Claudia P., Rubio, José D., Herrera, Juan C., Benavides, Pablo , Lee, Sang-Jik , Yeats, Trevor H., Egan, Ashley N., Doyle, Jeffrey J., Rose, Jocelyn K.C., (2012) "Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee" (Issue: 11, vol. 109). PNAS. www.pnas.org/cgi/doi/10.1073/pnas.1121190109

Egan, Ashley N., Schlueter, Jessica , Spooner, David M., (2012) "Applications of next-generation sequencing techniques in plant biology" (Issue: 2, vol. 99). American Journal of Botany. https://doi.org/10.3732/ajb.1200020

Doyle, Jeff J., Egan, Ashley N., (2010) "Dating the origins of polyploidy events" (vol. 186). New Phytologist. doi: 10.1111/j.1469-8137.2009.03118.x

Egan, Ashley N., Doyle, Jeff J., (2010) "A comparison of global, gene-specific, and relaxed clock methods in a comparative genomics framework_ Dating the polyploid history of soybean (Glycine max)" (Issue: 5, vol. 59). Systematic Biology. DOI:10.1093/sysbio/syq041

Egan, Ashley N., Reveal, James L., (2009) "A new combination in Pediomelum and a new genus, Ladeania, from western North America (Fabaceae, Psoraleeae)" (Issue: 3, vol. 19). Novon. doi: 10.3417/2008074

Egan, Ashley N., Crandall, Keith A., (2008) "Divergence and diversification in North American Psoraleeae (Fabaceae) due to climate change" (vol. 6). BMC Biology. http://www.biomedcentral.com/1741-7007/6/55

Egan, Ashley N., Crandall, Keith A., (2008) "Incorporating gaps as phylogenetic characters across eight DNA regions_ ramifications for North American Psoraleeae (Leguminosae)" (vol. 46). Molecular Phylogenetics and Evolution. doi:10.1016/j.ympev.2007.10.006

Innes, Roger W., Ameline-Torregrosa, Carine , Ashfield, Tom , Cannon, Ethalina , Cannon, Steven B., Chacko, Ben , Chen, Nicolas W.G., Couloux, Arnaud , Dalwani, Anita , Denny, Roxanne , Deshpande, Shweta , Egan, Ashley N., Glover, Natasha , Hans, Christian S., Howell, Stacy , Ilut, Dan , Jackson, Scott , Mammadov, Hongshing Jafar, Martin del Campo, Sara , Metcalf, Michelle , Nguyen, Ashley , O'Bleness, Majesta , Pfeil, Bernard E., Podicheti, Ram , Ratnaparkhe, Milind B., Samain, Sylvie , Sanders, Iryna , Ségurens, Béatrice , Sévignac, Mireille , Sherman-Broyles, Sue , Thareau, Vincent , Tucker, Dominic M., Walling, Jason , Wawrzynski, Adam , Yi, Jing , Doyle, Jeff J., Geffroy, Valérie , Roe, Bruce A., Saghai Maroof, M.A. , Young, Nevin D., (2008) "Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean" (vol. 148). Plant Physiology. https://doi.org/10.1104/pp.108.127902

Wawrzynski, Adam , Ashfield, Tom , Chen, Nicolas W.G., Mammadov, Jafar , Nguyen, Ashley , Podicheti, Ram , Cannon, Steven B., Thareau, Vincent , Ameline-Torregrosa, Carine , Cannon, Ethalinda , Chacko, Ben , Couloux, Arnaud , Dalwani, Anita , Denny, Roxanne , Deshpande, Shweta , Egan, Ashley N., Glover, Natasha , Howell, Stacy , Ilut, Dan , Lai, Hongshing , Martin del Campo, Sara , Metcalf, Michelle , O'Bleness, Majesta , Pfeil, Bernard E., Ratnaparkhe, Milind B., Samain, Sylvie , Sanders, Iryna , Ségurens, Béatrice , Sévignac, Mireille , Sherman-Broyles, Sue , Tucker, Dominic M., Yi, Jing , Doyle, Jeff J., Geffroy, Valérie , Roe, Bruce A., Saghai Maroof, M.A. , Young, Nevin D., Innes, Roger W., (2008) "Replication of nonautonomous retroelements in soybean appears to be both recent and common" (vol. 148). Plant Physiology. https://doi.org/10.1104/pp.108.127910

Egan, Ashley N., Crandall, Keith A., Fox, Charles W., Wolf, Jason B., (2006) "Theory of Phylogenetic Estimation" . New York, New York: Evolutionary Genetics_ Case Studies and Concepts.

Allison, James R., Morris, Michael Wayne, Egan, Ashley N., (2006) "A new species of Pediomelum (Leguminosae) from the Piedmont area of Georgia and South Carolina" (Issue: 1, vol. 22). United States: SIDA, Contributions to Botany.